Applications of Phase Contrast and Fluorescent Microscopy - Virtual Fluorescent Microscope - Wartburg Biology Department

Applications of Phase Contrast
and Fluorescent Microscopy

Filter Cube Fluorochrome Use
FITC
B

Acridine orange
Alexa Fluor 488 Phallodium
Bodipy FL
Bodipy FL C5 Ceramide
SYTO 9 and propidium iodide
Fluoroscein
SYBR Green
Alexa Fluor 488 Anitbody

Stains DNA, count bacteria in natural samples
Stains F-actin, used to detect microfilaments in eukaryotic cells
Lysosomes
Golgi
Live/Dead staining of bacteria
Immunoflourescence Tag
Comet Assay (DNA Damage)
Proliferation Assay
TRITC
G
Cy 3


Mitotraker


Rhodamine
Stains amino groups and used to label RNA probes for FISH (fluorescent in-situ hydridization) methods.

Stains mitochondria (live) and then will remain stained after fixation

Immunofluorescence tag.
DAPI
U
  Stains DNA, count bacteria in natural samples
Use as a counterstain for nuclei in eukaryotic cells.

Check out the Molecular Probes web site gallery to see many other applications of fluorochromes.